Biomedical Imaging and Instrumentation
Creating an Accessible Arduino-Powered Imaging Rig for Versatile Live Image Acquisition
Daniya Z. Ali (she/her/hers)
Undergraduate Research Assistant
Amherst College
Amherst, Massachusetts, United States
Lampros Panagis, PhD
Amherst Biology Image Center Director
Amherst College
Amherst, Massachusetts, United States
Ryan J. Kurtz
Scientific Instrumentation Specialist
Amherst College
Amherst, Massachusetts, United States
Marc A. Edwards, PhD
Assistant Professor of Biology
Amherst College
Amherst, Massachusetts, United States
The Global Forum for Health Research Report (1999) highlights the critical role of scientific research in advancing health in developing countries [1]. Limited access to biomedical research infrastructure in these regions poses obstacles in effectively managing and tracking global health challenges. Strengthening research infrastructure in the developing world can sustainably combat these disparities in health research.
In this study, an innovative and affordable Arduino-powered imaging rig, capable of conducting diverse developmental assays, ranging from time course movies to advanced image acquisition, was developed. Over the past decade, live cell microscopy has been instrumental in generating a wealth of structural and dynamic information, significantly advancing understanding in the biomedical sciences [2]. In this particular context, the customizable microscopy unit demonstrated its potential to visualize key differences in real-time development between wildtype and knockout kinase cells of Dictyostelium discoideum through accessible means.
Using this unique imaging rig to observe variation in D. discoideum cell lines, this study seeks to characterize the kinases responsible for PIP signaling pathways and phosphorylation. Phosphoinositides (PIPs), crucial intermediaries within larger signaling networks, coordinate complex actin-driven behaviours like directed migration and multicellular development. Kinases phosphorylate PIPs at three positions, each regulating specific signaling cascades. Identifying these kinases is critical for understanding PIP-mediated signaling. Defective PIP signaling affects all organisms, leading to conditions such as cancer, degenerative diseases, and cardiovascular issues in humans [3]. Therefore, robust understandings and accurate characterization of these signaling pathways using model organisms like D. discoideum are vital for both basic science and clinical perspectives.
The imaging rig designed in this study was composed of several components, including a PC with the open-source imaging software μManager, a microscope, a software-compatible digital eyepiece camera, an LED gooseneck illuminator, and an Arduino (Figure 1). Notably, the Arduino simplifies the process of loading new code onto the board, as it does not require additional hardware such as a programmer. A standard USB cable suffices for this purpose.
The Arduino was programmed using an easily adjustable code in C++ as a shutter device and was then attached at digital Pin13 to a relay that controls an illumination device. To complete the imaging system, the left microscope eyepiece was replaced with a camera which was also connected to the PC and configured through μManager’s acquisition settings. The imaging software settings allowed for the customization of parameters to suit a range of experiments through the ‘Multi-S Asq.’ tab.
In this specific application, the Arduino was set up to receive input from μManager via USB and trigger an output, which turned on the illuminator during image acquisition for one second every ten minutes for in vitro experiments. To protect the light-sensitive samples, a 3D-printed chamber cover was placed around the base of the microscope.
Developmental assays were performed for each cell line by first preparing and then plating 107 cells on an agar plate. Once the system was configured within μManager, images were automatically acquired every ten minutes over a twenty-four hour period.
After successfully capturing and saving the data over the twenty-four hour experiments, the images were conveniently analyzed directly in ImageJ, fully integrated through μManager. Critical differences in both the timing and morphology of the developmental programs between the cell lines were made easily observable (Figure 2). Through comparison of the precisely captured timed images, ME3- knockout cells displayed a delayed developmental timing with smaller slug structures in comparison to the wildtype phenotype. PikG knockout cells show no development at all throughout the twenty-four hours. The phenotypic differences between the cell strains could be further quantified through ImageJ.
The combination of software and hardware in the imaging setup enabled precise and automated image acquisition, avoiding prolonged illumination of the Dictyostelium cells, making an efficient and reliable system for performing long time course experiments. Beyond the current study, the extensive imaging rig can be successfully applied to various other experiments, such as chimeric assays, complementation experiments, and investigations of phagocytic and autophagic activity at low magnifications. Although there are similar technologies available at significantly higher costs, opting to design custom rigs comes with unparalleled creative license and autonomy at more accessible price points. The adaptability of this tool is vast, as it can be customized to meet specific demands of distinct experiments, providing limitless possibilities for observation, investigation, and analysis.
Moreover, as this project strives to establish a more affordable and flexible version of existing technology, it thereby reduces the entry barriers for biomedical research studies worldwide but especially in developing nations. In resource-limited settings, these cost-effective and accessible live imaging microscope units can serve as versatile tools, potentially playing a crucial role in swiftly assessing, monitoring, and addressing various concerns, including infectious diseases. This study highlights the pivotal role of technology in enhancing scientific research by promoting accessibility and creative design, especially in the context of global health and development.
This work was supported by the Gregory S. Call Student Research Fund and NSF. A special thanks to Dr. Marc Edwards for his unwavering trust and invaluable guidance throughout the research process.
[1] Harris, E. (2004). Building scientific capacity in developing countries: Simply transferring knowledge and instrumentation is not enough to help developing countries build their own research base. Such efforts must be tied to national and local needs to create trust and services for society in the long term. EMBO reports, 5(1), 7-11.
[2] Cole, R. (2014). Live-cell imaging: The cell's perspective. Cell adhesion & migration, 8(5), 452-459.
[3] Clayton, E. L., Minogue, S., & Waugh, M. G. (2013). Mammalian phosphatidylinositol 4-kinases as modulators of membrane trafficking and lipid signaling networks. Progress in lipid research, 52(3), 294-304.